Hi,
I have never heard of such a issue. For eMMC yes(if they don't shutdown properly, it can happen, that emmc is corrupted), but never from QSPI. Do you read/write something to the QSPI Flash with your design?. You could run our prebuilt Linux from the reference design and see if you can reproduce this issue? I know it's hard to find out what's happens, when I hear it appears very rarely.
br
John